PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G177900.1
Common NameB456_005G177900, LOC105794608
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 416aa    MW: 45271 Da    PI: 6.9485
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G177900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.62.6e-1763112255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +gr++AeIrdp+    +  r +lg+f+taeeAa a++ a+++++g
  Gorai.005G177900.1  63 RYRGVRRRP-WGRYAAEIRDPR----SkERRWLGTFDTAEEAACAYDCAARAMRG 112
                         59*******.**********84....25999**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1163112IPR001471AP2/ERF domain
SMARTSM003807.9E-3263128IPR001471AP2/ERF domain
PROSITE profilePS5103222.11563120IPR001471AP2/ERF domain
CDDcd000189.58E-3063119No hitNo description
SuperFamilySSF541715.43E-2163120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-2963119IPR001471AP2/ERF domain
PRINTSPR003672.5E-96475IPR001471AP2/ERF domain
PRINTSPR003672.5E-986102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEEAFKTLSG ITFVPDPDPR DSIADHPNKC AASTTTAVTP TTSNTPTNKR SLKENGGSGG  60
TMRYRGVRRR PWGRYAAEIR DPRSKERRWL GTFDTAEEAA CAYDCAARAM RGIKARTNFV  120
YPATEPHSAN DHFLPPFSFS KQSQSSIRDL NCIRHQFGQS SNWPPFASPH AGDFSGGGSS  180
TQRNASLNMI LFRDLLNSSS NSSLHAPPHQ SLPDHFSFTN GTCASSFPFT FSSNSSVLPG  240
GSLLNSSINN TSPRASDSIS DSFTGSTMTL PLKESNSSHA TVAPTTDDME FFPQEPSDSG  300
LLQEVIQGFL PKPSSKKQDV SATTTNCTYH SISPPVNEMT LGQSLSGLKK EPLGFYVDYN  360
NQAVPQQFES FNRTTAVHYA NEIPAKHLQV GQDMLDDIFQ YPELMSVLAA RVQNG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1864119359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479316.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A0D2PUS10.0A0A0D2PUS1_G
STRINGVIT_00s0291g00030.t011e-107(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-13DORNROSCHEN-like
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]